#!/bin/sh #PBS -q large #PBS -l select=2:ncpus=16:mpiprocs=16 #PBS -N rmpi #PBS -l walltime=1:00:00 #PBS -V cd $PBS_O_WORKDIR eval `/usr/bin/modulecmd bash load R` # -- Generate MPI_UNIVERSE host list from $PBS_NODEFILE export MPI_UNIVERSE=`uniq -c $PBS_NODEFILE | awk '{ print $2 " " $1 ", " }' | tr -d "\n" | sed -e 's/, $//'` mpijob -np 1 R --no-save -q -f ./dosnow-mpi-test.r > dosnow-mpi-test-32.txt